PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19408_BGI-A2_v1.0
Common NameF383_12243
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 208aa    MW: 23617.1 Da    PI: 10.2706
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19408_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.15e-21106196498
                                 E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                          B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                                 vl ps+  + ++++lp  fae+h +g+   s  ++l+ ++gr+W+v++  r k+g+  +++GW eF  +n+L egD++vF+l 
  Cotton_A_19408_BGI-A2_v1.0 106 VLRPSYLYRGCIMYLPSCFAEKHlSGV---SDSIKLQLPDGRQWSVRC--RYKGGKAKFSRGWYEFTLENNLGEGDVCVFELL 183
                                 7889*******************8666...336***************..667777779**********************99 PP

                                 SSSEE..EEEEE- CS
                          B3  86 grsefelvvkvfr 98 
                                 +++e  l+v+vfr
  Cotton_A_19408_BGI-A2_v1.0 184 RSREIVLKVTVFR 196
                                 9888889999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.1E-2595196IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-2497196IPR015300DNA-binding pseudobarrel domain
CDDcd100171.70E-24101196No hitNo description
PROSITE profilePS5086314.254103198IPR003340B3 DNA binding domain
SMARTSM010197.0E-22103198IPR003340B3 DNA binding domain
PfamPF023629.2E-19106196IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MFGGSKLSNC INWGGDVNRQ NPKAVNNQPI RGSGAMKPEP KKRGRKRKFD PNVQDSSAGR  60
EDDADMRLRC YESASARKRT VTAEERERAI NAAKAFEPIN PFCRVVLRPS YLYRGCIMYL  120
PSCFAEKHLS GVSDSIKLQL PDGRQWSVRC RYKGGKAKFS RGWYEFTLEN NLGEGDVCVF  180
ELLRSREIVL KVTVFRVMES GGLMHRSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_B3e-726919915144B3 domain-containing transcription factor VRN
4i1k_A3e-726919915144B3 domain-containing transcription factor VRN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5879938e-83JX587993.1 Gossypium hirsutum clone NBRI_GE22287 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462597.11e-155PREDICTED: B3 domain-containing protein REM19-like
RefseqXP_012462596.11e-155PREDICTED: B3 domain-containing protein REM19-like
SwissprotQ8L3W13e-81VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A0B0PYM71e-155A0A0B0PYM7_G
TrEMBLA0A0D2W2K41e-155A0A0D2W2K4_G
STRINGPOPTR_0009s11170.17e-96(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-78B3 family protein